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ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes
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Homologous Recombination and Transposon Propagation Shape the Population Structure of an Organism from the Deep Subsurface with Minimal Metabolism
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Self-Buffering system for Cost-Effective production of lactic acid from glucose and xylose using Acid-Tolerant Issatchenkia orientalis
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Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities
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Cell Extracts from Bacteria and Yeast Retain Metabolic Activity after Extended Storage and Repeated Thawing
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A large-scale screening campaign of putative carbohydrate-active enzymes reveals a novel xylanase from anaerobic gut fungi
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An RNA ligase partner for the prokaryotic protein-only RNase P: insights into the functional diversity of RNase P from genome mining
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From bench to biotech: how a CURE cultivates student self-efficacy, gains in scientific thinking, and career aspirations
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Taking Stock of the Known and Unknown Microbial Space
… regulating global nutrient cycles. The information gained from understanding the interactions between microbes, hosts, … a census of publicly available bacterial and archaeal sequences. Kyrpides heads the JGI’s Microbiome Data Science … biodiversity, they used five universally conserved, protein-coding marker genes on nearly 2 million genomes, including …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… as a reservoir for carbon compounds that plants generate from carbon dioxide they take in. In this way, encouraging … this symbiosis could improve the way soils store carbon from the atmosphere. For plants, boosting this relationship … seedlings grown in a controlled environment chamber, so the fungus could colonize the plants’ roots. Then, comparing …
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2024 Progress Report
… home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the … processed 13,700 metabolomics samples With our users, 247 publications were published   … AI clustering algorithms to identify billions of protein sequences in metagenomes.  We continue to engage with our …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… of several communities in New Mexico via leakage from a local dry-cleaner. Researchers  identified two … process, researchers collected microbial samples from wells at the site in 2007, 2009, and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department …
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