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Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
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JGI@25: Studying Sorghum’s Survival Skills
… reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … diverse lines of sorghum to understand what genes exist across the species. Earlier pan-genomes for other plants, like the …
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From Textbook to Real World Applications
… synthetic biology, Robert Evans and Jan-Fang Cheng in the Functional Genomics group took it upon themselves to mentor …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like …
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Jeremy Schmutz
… resource to improve functional gene descriptions across the plant kingdom. Nucleic Acids Res . 51, … Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement. Nature … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… “ Advanced analytics for uncovering virus dynamics and functional potential ," is among the five focused on tool … (i) classifying viruses into groups that can be compared across studies, (ii) predicting which hosts these viruses are … environmental samples to help uncover the phylogenetic diversity of the human gut microbiome. By bringing their …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… and pH levels vary wildly from spring to spring. These biodiversity hotspots harbor specialized microbial communities … study published in  The ISME Journal     focused on a class within  Chloroflexota called  Dehalococcoidia . Some  … could have the ability to manipulate plant growth.   Across the phylum, diverse  Chloroflexota show the ability to …
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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs growth of poplar, a … root cells. The fungus is almost always found among and within poplar trees, and in an effort to understand its … that directly influence plant phenotype, such as secreted proteins. However,  M. elongata  seems to encourage the …
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Advantages and Limits of Metagenomic Assembly and Binning of a Giant Virus
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