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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core values, which guide the relationships we nurture in our workplace and seek to establish … providing input and advice on JGI policies and practices that affect users and their science including technical …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … diversity makes it easier to genetically manipulate. One important improvement to the bean spawned from this …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring … The Science Soil bacteria in the genus Streptomyces are nature's chemical factories. They hold genetic blueprints for … begins on the genome. This revealed a sweeping cellular response: The bacterium absorbs potassium ions to …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day … to deal with hot and dry conditions could help us to one day develop plants that are more drought-tolerant. These … Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed …
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Fungus Fuels Tree Growth
… feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can thrive in the soil as a … matter, or as an endophyte, living between a plant’s root cells. The fungus is almost always found among and within … . By contrast, using a different endophytic fungus,  Ilyonectria europaea , had no effect on growth. Liao’s team …
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A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β‑Linked GlcNAc Polysaccharides
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On … foundation for Phytozome v10) back in 2014.  Several components of that codebase are no longer supported, and there … Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed …
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay Paropkari, … My favorite thing is the mentorship provided by JGI. Everyone at JGI is so nice and helpful.”     Mo Kaze, UC Merced … Merced JGI Mentors : Tanja Woyke & Jessica Jarett, Single Cells Group “My experience at JGI has exposed me to the …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full … polymorpha. Commonly known as liverwort, this was done to gain insights into gene families involved in … into genes critical for roles including plant growth and cell wall development.  M. polymorpha is also among one of …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory hosted a webinar to showcase how researchers can gain … and molecular characterization from the JGI and EMSL in one proposed research project. In the same proposal, …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal … or plant genomes. [Download PDF] End-of-year Goal – Develop one new computationally enabled approach to analyze complex …
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