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2024 Progress Report
… of products, making data easier to access and use, and by investing in the latest advanced genomic capabilities to … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to … to define the structure and function of a unique cyanobacterial protein and understand its role in photosynthesis. …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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JGI@25: From Life at the Extremes to Editing Genomes
… for her work on CRISPR-Cas9, technology described by the Nobel Foundation as having “a revolutionary impact on … have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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JGI@25: Studying Sorghum’s Survival Skills
… reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … improve the genome’s accuracy, and increase its length by 29.5 Megabasepairs. 2017: Pan-genome analysis of sorghum begins. Enabled by the JGI’s Community Science Program, Todd Mockler and his …
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JGI@25: Solving the Mystery of the Missing Oil
To find an explanation, his team tracked the thousands of bacterial and archaeal species using a DNA-based array …
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NeLLi — Symposium on New Lineages of Life
This symposium series will provide an overview of the bacterial, archaeal and microeukaryote diversity cataloged …
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Hiroshi Otani
DW, Doering DT, Mouncey NJ. Cytochromes P450 involved in bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … such as ethanol and acetone . To help reduce production of byproducts, the JGI DNA Synthesis Science program developed …
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Fishing for Novel Cellulose Degraders
… specific catches. A similar technique has been developed by researchers led by Tanja Woyke at the U.S. Department of Energy (DOE) Joint … shotgun sequencing. The team first tested the approach on bacterial laboratory models to set a reference for its …
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The Case for Conservation
In a recent Scientific Advances article , a team led by McDaniel and his former graduate student Sarah Carey, now … ran the gamut of sequencing technologies, from making a bacterial artificial chromosome library to long-read … a similar sense of satisfaction. … This work was supported by NSF DEB-1541005 and start-up funds from UF to S.F.M.; …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… with the JGI. Working together, they found most bacterial genomes from water and soil communities were at … a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy … Charles Gawad has been supported for this work by a Chan Zuckerberg Biohub Investigator Award, NIH …
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The Power of One, Amplified
… the value of conducting large-scale single cell genomics by collecting nearly 500 single cells from a single low … genomes directly from environmental sequence data, by piecing each genome together from large mixtures of … more moderate ecosystems. A few years ago, a candidate bacterial lineage was identified from microbial and …
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