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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re … National Laboratory. Letters of Intent are due March 16, 2022 to freely access resources at multiple DOE user …
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Better Living Through Bioenergy
Mukhopadhyay and Steve Singer are harnessing the versatile bacterium Pseudomonas putida to break down biomass and … a more sustainable, biobased economy. They conduct research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… one of five Antioch High School rising juniors who participated in internships at the DOE Joint Genome Institute this … the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s … in filling or updating geographic information for nearly 1,100 samples,” said Reddy. Kaushal also reviewed and assigned …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga Plocamiomonas … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department of Energy …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change … communities in the ocean drive the biological pump that takes carbon from the atmosphere and keeps it in the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and … To better understand the range of bacteria and archaea that rely on this form of metabolism, researchers recently … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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JGI-UC Merced Interns Share Their 2021 Experiences
… from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone science presentation … Impact on Microbial Root … Cross Species Comparison of Plant Single-cell Transcriptomes of Rice and Arabidopsis …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At … microbial communities. One day, these phages could boost plant-microbe interactions, nutrient cycling, or carbon … score. The result is a genus-level host prediction tool that draws on the strengths of multiple virus-host …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis … and cancer genetics. Dr. Blow carried out postdoctoral work at LBNL, where he worked on computational and experimental … Shulse et al. 2019. Engineered Root Bacteria Release Plant-Available Phosphate from Phytate. Appl Environ …
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