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An Integrated Dataset to Understand Ecosystem Interaction
… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … data set will help identify how different elements of the ecosystem interact and respond to changes in the … Dubbed “the” bioenergy tree, poplars are known for their genetic diversity. They hold economic value as both biofuel …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five … in soil for the first time. A second approach known as DNA stable isotope probing (DNA SIP) relies on incubating … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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The fungus that made itself at home
… habitat. The Science By comparing genetic information from similar organisms, researchers have gained insights … plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the … than its partner brown rots. The team’s results reflect the evolutionary gains and losses of S. lacrymans var. lacrymans …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 1
… Gary Trubl, a virologist at Lawrence Livermore National Laboratory, wants to understand how viruses impact the release of greenhouse gases from Arctic permafrost. But to see what they’re doing, he first needs their DNA.   …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science … studied what happens to the tree’s physical traits and gene expression when the fungus is present. The Impact Black … the Plant-Microbe Interfaces program at the Oak Ridge National Laboratory (ORNL) sponsored by the Office of Biological …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their … in 2004. The main object of her research was the symbiont community of a gutless oligochaete for which she … is the Microbial Science Program Head as well as our Deputy of User Programs. Click to learn more about the program's …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm … host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act as …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga Plocamiomonas psychrophila can thrive in changing conditions. A … ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … between the two institutions to help train the next generation workforce.     … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( … buck. The research team reports that transferring just four genes encoding these enzymes to another plant, such as  … AFRI (1758976 to A.H. and E.S.) for sesquiterpenoids, National Science Foundation Plant-Biotic Interactions Program …
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Team Science Reveals Important Protein in Poplar
… bioenergy crops The Science Scientists at Brookhaven National Laboratory (BNL) led a team that  identified a protein … Described as the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of Energy … molecules that combat infections. When the  PtrbHLH011 gene was knocked out in poplar, those plants produced double …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March 17, 2020, a shelter-in-place … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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