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Transcriptomic Analysis of the CAM Species Kalanchoë fedtschenkoi Under Low- and High-Temperature Regimes
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Activity‐Informed Network Analysis Reveals Keystone Microbes Shaping Freshwater Ecosystem Function
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing … of Illinois Urbana-Champaign, conducted technoeconomic analysis to determine if this technology might have value in … million annually.  The team is working on developing new microbial strains that can synthesize other bio-based …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate … and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two … 188 of which were shared with previous studies in the same system. With the right functional characterization, those …
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Introducing New Members of the JGI User Executive Committee
… “you-wren”) of the University of Arizona! They join nine other JGI users already serving on the UEC – go here … [public but use-restricted] exist on [the JGI data portal] IMG or how to deal with situations in which they … Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would like to help advance JGI …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… for users requiring multiple omics methods to examine microbial chemical production. The Science Soil bacteria in … standard conditions. As described in a recent issue of mSystems , scientists found that adding salt to the growth … or related microbes can work with the JGI to apply the same integrated approach to unlock useful chemistry in their …
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Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … (cDNA), reducing the amount of time it takes to produce a dataset from months to days and halving the total reagent … it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which allows …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. … Associate Director of Science; Todd Anderson, Biological Systems Science Division Director; and Ramana Madupu, BER … Ops Deputy post by  Nick Everson , the person Ray hired in 2007 to serve as JGI’s Business Manager. In 2012, Nick …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence Berkeley National Laboratory … to assemble, for the first time these large environmental  microbial data sets for JGI users, which include projects … in scale when running on DOE’s  exascale computing systems,” added Kathy Yelick, a professor of electrical …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …
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iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria
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