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The Power of One, Amplified
A preview of how large-scale single cell genomics complements metagenomics studies. The … that species specific sets of single cells harbored mobile genetic elements that were missed within paired metagenome … of within species recombination, indicating variation in gene flow between the analyzed community members. The Impact …
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A Complex Confection Decoded: Sugarcane Reference Genome
… genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the … in  Nature by an international consortium. With the genetic code of sugarcane, researchers were able to map the location of genes that provide resistance to the brown rust disease that …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support … University in 2005, where he studied RNA editing and cancer genetics. Dr. Blow carried out postdoctoral work at LBNL, … board member for Scientific Reports … Education … Selected Publications … Awards and Service …
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2024 Progress Report
… use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to … from this review, I can say that a key area for the JGI’s evolution is in how we manage our data and how we can make …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate … teems beneath your feet. Both bacteria and fungi have genes that can break down plant fibers. But are they both … sequences (transcriptomes) from their soil samples. This gene expression dataset was particularly important for …
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Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps
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Cell by cell: population genetics in the wild
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Identification of mobile genetic elements with geNomad
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems …
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Understanding Wildfire Recovery, Starting in Soil
… a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of … across a spectrum of burned soils. By connecting microbial genes with functions useful for forest recovery, this study … on post-wildfire soil microbiomes have focused on marker gene analyses, which take inventory of which microbes are …
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Genome-Wide Association Studies across Environmental and Genetic Contexts Reveal Complex Genetic Architecture of Symbiotic Extended Phenotypes
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JGI on the 2020 Highly Cited Researchers List
… those recognized by Clarivate Analytics as “true pioneers in their fields over the last decade, demonstrated by the … Biotechnology.  The work also led researchers to identify a gene related to seed dispersal in wild populations for the … of 52,515 publicly-available microbial draft genomes generated from environmental samples around the world. Much …
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