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… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … alga genome) and  MycoCosm (for the fungus genome) to aid analysis. Many of the results were unexpected. For example, … the lichen partners. This genomic and transcriptomic analysis has opened the door for more incisive …

… Miscanthus  sequence offers insights into benefits of polyploidy and … the perennial grass Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into … crops such as sugarcane and sorghum. The M. sinensis genome analysis explains the hybrid origin of giant miscanthus ( M. …

… serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons for wishing to … aims to help overcome common user bottlenecks in access, analysis and sharing of JGI-generated data. She is also …

… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … varieties that have high productivity across a range of environments is becoming increasingly important for food, … a combination of really cutting-edge genomics and genetic analysis with large scale data collection,” he added. Jeremy …

… on “Integrated Multi-omics Analyses for the Prediction of Metabolic Flux in. Lignin Conversion”       … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …

… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … five oceanic regions. In doing so, they found a high degree of variability in the types of microorganisms that inhabit … metagenomic sequencing to the study as well as  genome analysis, providing authors a more complete picture of the …

… annotation in fungal genomes. The Science In a proof-of-concept study, researchers demonstrated that a new … phenotype using a strategy called reciprocal hemizygosity analysis via sequencing (RH-Seq). Strains of S. cerevisiae … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …

… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … feedstock with a complex genome with multiple copies of its chromosomes. Switchgrass has deep roots that allow it … team conducted several large-scale field experiments and analysis to find relationships between sequence variation …

… genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single set of chromosomes, are available. The genome assemblies … continents, including Antarctica where it is a major part of the flora, fire moss has adapted to conditions such as UV …

… A preview of how large-scale single cell genomics complements … studies. The Science Researchers demonstrated the value of conducting large-scale single cell genomics by collecting … represented by enough single cell genomes to facilitate an analysis of within and between population heterogeneity by …

… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified fungal gene families that help determine … friends or foes. The Impact Microbial communities comprised of fungi and bacteria can thrive in plant roots. They play …

… UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal waters and sediment with … today. I didn’t know anything about Principal Component Analysis (PCAs) when I first started, and overall found …