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Size-fractionated metagenomic depth profiles from two sulfidic stations in the Chesapeake Bay.
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Eight genome sequences of bacterial environmental isolates from Marr Pond, Antarctica
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FISH–FACS Enabled Targeted Recovery of Genomes from Uncultivated Environmental Microbial Populations
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis … measurements of primary and secondary metabolites from plants, microorganisms, and environmental samples using … et al.  MAGI: A Method for Metabolite Annotation and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA … analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & sequencing Q(uestion): How much … but we can already provide raw mapping files as well as gene- and contig-level coverage. Other related products Q:  …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… list features 6,900 researchers working in 21 fields.  Congratulations to the  2022 Highly Cited Researchers from the JGI recognized for their “significant influence in … thought. Instead, it turns out this fern has been co-opting genes from bacteria. Schmutz was also involved in  a …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The … that had in their genomes a surprising tool: a “diversity generating retroelement,” or DGR. The DGR could mutate the … and viral genomes, as well as genomes sampled all at once from the same environment, called metagenomes. Why? Simon …
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What Happens Underground Influences Global Nutrient Cycles
… projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of … Institute (JGI)—have selected 11 proposals for support from 53 received through a joint research call. Submitted … of the JGI’s Flagship genomes. She and her colleagues have generated a high-quality, phenotyped mutant library in …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for … of Energy (DOE) has invested in training the next generation workforce through funding opportunities managed … readily available via the KBase platform. This effort grew from a  modularized training program with the aim for future …
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Changing expression patterns of TonB-dependent transporters suggest shifts in polysaccharide consumption over the course of a spring phytoplankton bloom
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Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments
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Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans
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