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Kjiersten Fagnan
… closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in … winning team at the Supercomputing conference, SC’18, led by researchers at Oak Ridge National Laboratory. Dr. Fagnan … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and … are able to partner to form lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could …
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Decoding Yellowstone’s Microbial Mats
Life as we know it wouldn’t exist without cyanobacteria; they began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and …
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … influence biogeochemical cycles in soils and sediments and plant-microbial interactions in crops. He has been a PI or Co-PI on five …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, … viruses — to support scientists around the world. Most of those researchers send their samples in from afar, …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working … Line Between Plasmids and Phages … Polymorphisms Created by Transposable Elements … Evolution of the Mitochondria … Impact on Microbial Root … Cross Species Comparison of Plant Single-cell Transcriptomes of Rice and Arabidopsis …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
To set up flexible, repeatable experiments on plants and microbes, Trent Northen’s … group at Berkeley Lab created a fabricated ecosystem – an EcoFAB. These small plastic growth chambers let researchers …
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THE Bioenergy Tree
The US Department of Energy’s favorite tree is poplar. They’re the … trees in the Northern Hemisphere, making them tantalizing plants to harness for bioenergy. In this episode, hear from …
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VEGA Symposium
Hosted by the JGI and co-organized with NIST,  the goal of the Viral … and characterize uncultivated viruses, understand the role of viruses in natural ecosystems, and functionally explore …
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Gotta Catch 'Em Gall
Kasey Markel and Patrick Shih (UC Berkeley and the Joint BioEnergy Institute) are looking for new ways to engineer plants. So they’ve looked into wasps that program oak trees …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
As set out in the JGI Five-Year Strategic Plan – “Beyond … introduction to the resources and disciplines advanced by the JGI, we seek to inspire more students to enter the … to further develop a more diverse and inclusive pool of talent for career opportunities at JGI and Berkeley Lab. …
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