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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… A special issue of Synthetic Biology celebrates research enabled by the JGI … case studies, JGI scientific users share how they’ve worked with the JGI DNA Synthesis Science Program, which started in … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Len Pennacchio
… 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio received his Ph.D in …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this role he supervises the Genome Assembly, QA/QC, and User Support Analysis teams. Together, these teams … Nottingham University, UK PhD in Genomics, University of Cambridge, UK Postdoctoral training Wellcome Trust Sanger …
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The Case for Conservation
… Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single set of chromosomes, are available. The genome assemblies highlight the multiple advances in sequencing …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to … Photobiont and fungus (mycobiont) live intertwined, with the photobiont transferring part of its … (IGSP 2008001) to DA, FL, and FD from the Duke Institute of Genomic Sciences and Policy (for DNA sequencing and …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … This work was supported by the U.S. Department of Energy, Office of Science, Biological and Environmental …
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the filamentous … a job site for a task that requires a flathead screwdriver with a full toolbox including Phillips and specialty …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… they’d oust resident tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base are … displacing these important cold-water communities of algae with warm-adapted ones, a trend that threatens to … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … His research activity is focused on developing and implementing new technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … two polysaccharides can yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US …
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Trent Northen
… Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental research, including through the Joint … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the …
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Silver age of GOLD introduces new features
… sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … the appropriate contextual information, or metadata, stored with them. GOLD provides manually curated metadata resources … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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