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David Goodstein
With a background in experimental and computational surface physics, Dr. Goodstein held positions at Cornell, IBM, Utah State University, … building tools to facilitate expert curation of human gene models in support of JGI’s contributions to the Human Genome …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… research cruises, they dipped their self-closing containers into sea water to sample algal communities along transects … isolating the algal communities on filters, they sequenced DNA ‘marker’ gene sequences to identify the microbes. And in … melting away.” Driven by climate change The team used a model from the Intergovernmental Panel on Climate Change …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome Institute hosted … Prediction to Annotate Novel Viruses: the Case of Polintoviruses Josue Duque and mentor Miguel Romero, … together on predicting the level of photosynthesis in a model green alga called Chlamydomonas reinhardtii. We’re …
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Complete Genome Sequence of Methanosphaerula palustris E1-9CT, a Hydrogenotrophic Methanogen Isolated from a Minerotrophic Fen Peatland
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JGI announces 2023 CSP Functional Genomics awardees
… research from potential users who need help translating genomic information into biological function. Through our CSP Functional … call , we look for projects that will leverage the JGI’s DNA synthesis and omics capabilities to enhance …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … on a few species like Arabidopsis or rice as homology models for computational function predictions and also due … more plants are studied? Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing …
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to … 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed 13,700 metabolomics samples With our users, … at the same time help us manage costs. We have also scaled DNA-affinity purification sequencing (DAP-seq),  stable …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who … help crop breeders and researchers predict how crops and model organisms may evolve.  Determining the genetic codes …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March 17, 2020, a shelter-in-place order for all residents took effect in six San …
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JGI announces final round of 2022 Functional Genomics awardees
… research from potential users who need help translating genomic information into biological function. Through our CSP Functional … call , we look for projects that will leverage the JGI’s DNA synthesis and omics capabilities to enhance …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our … called stomata. And through those pores, water is moved into the atmosphere basically along its concentration …
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