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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… sciences field. Roux will be recognized at the 2025 ASM Microbe Meeting in Los Angeles, Calif.  Roux is also one of … in natural ecosystems, and functionally explore viral genetic diversity.  In 2021, he was among those selected by … analysis to better characterize how viruses infect soil microbes and influence how soil ecosystems function. He was …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga into a powerful … of an oil-producing green alga, and demonstrated precise gene targeting in the genome in the November 2025 issue of … genome-scale engineering technologies to control plants and microbes for bioproducts and biomaterial manufacturing.  …
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Katherine Louie
… T, et al. MAGI: A Method for Metabolite Annotation and Gene Integration. ACS Chem Biol. 2019;14: 704–714. 6. … in rhizosphere microbial community assembly. Nat Microbiol. 2018;3: 470–480. 7. Louie KB, Bowen BP, McAlhany S, Huang Y, …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… conditions. Additionally, high-temperature (thermophilic) microbes are of interest for their potential use in number … chain reaction technology that enables researchers to generating thousands to millions of copies of a particular … analyses, transcriptomics for microbial genomic activity (gene expression), and direct microscopy. Through the JGI’s …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… the global diversity of large and giant viruses. While the microbes in a single drop of water could outnumber a small … more than 8,500 publicly available metagenome datasets generated from sampling sites around the world, including … out and characterize uncultivated viruses. For instance, a 2018 study from a JGI-led team uncovered giant viruses in …
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Matt Blow
… University in 2005, where he studied RNA editing and cancer genetics. Dr. Blow carried out postdoctoral work at LBNL, … et al. 2021. Persistence and plasticity in bacterial gene regulation. Nature methods 18 (12), 1499-1505 Shulse et … Appl Environ Microbiol 85(18):e01210-19 Price et al 2018. Mutant phenotypes for thousands of bacterial genes of …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β‑Linked GlcNAc Polysaccharides
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Ancient Algae Reveal Secrets of Plant Evolution
… Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  … of how early plants transitioned from water to land. Key gene groups involved in stress tolerance and …
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JGI Early Career Researchers Featured in mSystems Special Issue
… outline more targeted approaches to reconstruct individual microbes in an environmental sample beyond the … into several small pools before sequencing to recover rare microbes. The technique was applied to a recent Nature … can develop high-throughput and high-resolution studies of interactions between host cells and viruses in the …
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