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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version … of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… A special issue of Synthetic Biology celebrates research enabled by the JGI … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … PI on this project. “I view the program as an excellent platform to build collaborative research initiatives.” Yasuo …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently … genomes of symbiotic species available: 73 saprotrophs and 62 mycorrhizal species. The 62 mycorrhizal species include 29 …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … research by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially …
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed with feathers … microbes. The new technique is another tool for microbial ecologists to learn more about the diversity … Laboratory and the U.S. Department of Energy. Support for this research was also provided by the Great Lakes …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … more about BioSANS. Letters of Intent are due March 17, 2021 for the FICUS proposal call. Q&A from the Webinar: …
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Charting Progress toward Professional Goals
… from their summer experiences at the JGI Berkeley Lab offers a variety of programs to help inspire and train the … next generation of STEM professionals. Students can apply for internships and work onsite with an experienced … while Oliver Benelli applied through the University of California's  CalTeach initiative. During their time at the …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. … do so, they compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … type of food that was in the contaminated aquifer in 2007 to achieve this goal. In less than four years, parts of …
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The fungus that made itself at home
… new ecological habitat. The Science By comparing genetic information from similar organisms, researchers have gained … plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the … to thrive in manmade environments. As reported January 5, 2018 in The ISME Journal , a team led by University of Oslo …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of … cycles, and possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as extreme … understand how they’ve adapted to these conditions, information that could have biotechnological applications. The …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …
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