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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … genome. They were interested in genes involved in repair of DNA damage, and those associated with atherosclerosis and … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in … Center (Danforth Center) drove up and down the highways of the continental United States, occasionally pulling over … of plants have resulted in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her colleagues, …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … pretty important role in the cycling of nutrients in these systems.” -Mike Wilkins, Colorado State University GI users … National Laboratory. Letters of Intent are due March 16, 2022 to freely access resources at multiple DOE user …
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Tanja Woyke Elected to American Academy of Microbiology
… Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in … Genomics Department Head for the Environmental Genomics and Systems Biology Division of the Lab’s Biosciences Area since … and giant viruses belonging to the nucleocytoplasmic large DNA viruses (NCLDV) supergroup. As a result, the giant virus …
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project management, … extensive experience in Laboratory Information Management Systems (LIMS), bioinformatics, and genomics data …
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Ancient Algae Reveal Secrets of Plant Evolution
… 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … tolerance and multicellularity enabled plants to develop complex structures and adapt to changing environments — … three strains of  Zygnema circumcarinatum . Published  May 2024 in  Nature Genetics by an international research …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … to support a forest, and species vary across Earth’s ecosystems.  Recently, in work  published in  New Phytologist , … who nominated species for sequencing and then sent DNA and RNA samples to JGI,” Grigoriev said. All of these …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, including over 28,000 …
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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program … of the latest call , a total of 70 graduate students from 52 universities were selected to carry out part of their … JGI’s User Programs deputy and head of the Microbial Systems group. Tringe’s research group focuses on the roles …
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Exploring the Diversity of the American Prairie’s Switchgrass
… A tall native plant of the North American prairie, switchgrass ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … how these changes affect the dynamics and functioning of ecosystems. She leads a recently approved CSP New Investigator … in how microbial communities can efficiently degrade complex polymers that are not easy to break down, as well as …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … novel technique to access high-quality genomic information using minute quantities of DNA derived from individual environmental cells. The proof …
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