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Adopt-A-Genome
In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. … and Mark Soghomonian share what it was like to take on one of these genomes.  …
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Daniel Udwary
Dr. Udwary serves as a computational biologist for JGI’s Secondary Metabolites group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in bacteria and fungi. Prior …
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could … from greening disease. You’ve probably never heard of trifoliate orange. Otherwise known as  Poncirus …
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JGIota: Looking Back at Methane-Making Microbes
… food and fiber, but raising these animals also produces an atmosphere-warming gas: methane. Those emissions mainly come … microbes — the bacteria and archaea breaking down plant matter. So since 2010, the JGI has supported researchers … studying those microbial methane-makers. Eventually, that could help us dial back their emissions, while still …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets … — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research …
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Alabama A&M Interns Access An Abundance of Knowledge
… research training experience. Enabled by the DOE RENEW initiative, undergraduate student Ti’Yanna Watson and graduate … mentors Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant … has been just the accessibility to an abundance of knowledge. There’s so many scientists here that are willing to …
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Green Algae Reveal One mRNA Encodes Many Proteins
… in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a … a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental … PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … bioremediate toxic substances has led to the development of cost-effective environmental cleanup strategies. Summary …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and …
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy … at the DOE JGI that provide hands-on experience in cutting-edge genome research and apply experimental and computation …
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I-Min (Amy) Chen
… research has been focused on semantic and object-oriented data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for …
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JGI Interns at UC Merced Earn CAMP Merit Awards
As part of the ongoing partnership between DOE JGI and UC Merced to … and inclusion in science and research, two undergraduate students from UC Merced recently had summer internships … Research Symposium , held February 6 at the University of California, Irvine, Cristhian and Bryan were among 5 UC …
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