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Soil virus offers insight into maintaining microorganisms
… effort, researchers have identified a protein in soil viruses that may promote soil health. The work was enabled … AMGs in soil viruses thought to break down chitin, the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis … and AMGs. It could spawn future research into understanding why these AMGs exist in the first place, and what function …
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Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging
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Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
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Synthetic Biology Lab
… group: Our production group operates as user facility that aims to provide access to state-of-the-art DNA … We focus our efforts on integrating database mining and sequence design with scaling the production of large, … developing methods for converting digital information from sequence databases into biotechnological or environmental …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 2
… is using bioinformatics and isotopes to track how viruses influence the flow of carbon in permafrost.  …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 1
… Livermore National Laboratory, wants to understand how viruses impact the release of greenhouse gases from Arctic …
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Synthetic Biology Informatics Group
… Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  … tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …
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Frequently Asked Questions: Proposal Submission
… The deliverables can range from raw sequence data to well-annotated assembled genomes to … listing of approved proposals can be found here. All sequence data will be accessible on the JGI Data Portal. … Yes. You should use it to demonstrate that you have the capability to perform the plans described …
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Publication Policy
… communication norms around JGI contributions, ensure that all contributors to a research project are … journal in which the research is published. The JGI expects that the data produced by the facility result in scientific … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … and best practices for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers … viral genomes . The Impact The microbes that play key roles in cycling nutrients such as carbon, …
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Giant Virus Infection Signatures Are Modulated by Euphotic Zone Depth Strata and Iron Regimes of the Subantarctic Southern Ocean
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CSP New Investigator Call
… the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals … to review the JGI’s sample requirements . Samples that are not available in a timely manner will delay processing, while samples that are of insufficient quality or quantity will preclude …
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