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… of microbial communities based on their metagenome sequence, in the context of reference isolate genomes … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and … resource hub that provides access to publicly available sequenced algal genomes and genome annotations generated by …

Lake Mendota sits right next to the University of Wisconsin, … Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater … 3 episodes are the story behind that giant assembly from Lake Mendota. In this episode: the software evolution that …

… for advice!      … The deliverables can range from raw sequence data to well-annotated assembled genomes to … listing of approved proposals can be found here. All sequence data will be accessible on the JGI Data Portal.   … … the CSP and FICUS programs? … How much will it cost me to sequence or synthesize my target or obtain metabolomics …

… quantitative analysis strategy for stable isotope probing metagenomics . mSystems , … Eloe-Fadrosh, Emiley A. et al. (2016)  Metagenomics uncovers gaps in amplicon-based detection of …

… the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals …

… a microbial community that might be quietly improving the soil. Penn State researchers Mary Ann Bruns and Terry Bell …

… the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing …

… our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, we’ve covered the … this project. But every part of this project depends on lakewater samples — so this episode is a look at how …

… is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This highly … workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides access to the wealth of public microbiome sequence data and enables the user to analyze these data …

… an environment. For example, SIP experiments can show how soil microbes cycle nitrogen and carbon, or how freshwater … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like …