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Frequently Asked Questions: Proposal Submission
… submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review … for advice!      … The deliverables can range from raw sequence data to well-annotated assembled genomes to … data from an approved proposal? … I am applying for a research grant. I would like to request genomic resources from …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in … and comparative analysis of thousands of archaeal and bacterial type strains ( GEBA-type strains project ), the … al. (2017) Protein structure determination using metagenome sequence data. Science   355(6322):294-298 Paez-Espino D. et …
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Metagenomic Sequencing of Two Salton Sea Microbiomes
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Frequently Asked Questions: Project Management
Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA … can also generate various reports. Access the reports by searching for projects in the portal search page and then … I request a culture/slant/DNA of an organism that has been sequenced at the JGI? … How do I check the current status of …
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Viruses control dominant bacteria colonizing the terrestrial deep biosphere after hydraulic fracturing
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The … particularly sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …
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Offerings & Capabilities
… of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge capabilities to help advance their science by … through end-to-end automation, and further advancing sequence applications, single cell genomics, DNA synthesis, …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, … tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination … pipeline as well as provide process automation support Research Team    … For further details, please reach out to …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and … domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, “Once …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … sequence to biological inference. … Genome sequences of key bacterial symbionts of entomopathogenic nematodes: …
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Exploring the limit of metazoan thermal tolerance via comparative proteomics: thermally induced changes in protein abundance by two hydrothermal vent polychaetes
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