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Protocols
Weight DNA extraction: … RNA Extraction Protocols: … iTag protocols: …
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iPHoP: A Matchmaker for Phages and their Hosts
… to commandeer. For bacteriophage viruses, these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, …
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A Viral Ecogenomics Framework To Uncover the Secrets of Nature’s “Microbe Whisperers”
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Exploring the roles of microbes in facilitating plant adaptation to climate change
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Microbes in thawing permafrost: the unknown variable in the climate change equation
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JGI Launches Latest Strategic Plan
For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … Biosciences Associate Laboratory Director, of the 100-page document with over 200 actionable milestones. JGI … leadership role in a Microbiome Data Science effort (pages 37-39) and the launching of a Secondary Metabolites …
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Fishing for Novel Cellulose Degraders
Lab). Using a single-cell screen, they can now identify microbes with specific functional characteristics. When they … bacterium typically found in low abundances. The Impact Microbes are known to be key contributors to the planet’s … User Facility, is supported under Contract No. DE-AC02-05CH11231. The work was supported by a JGI Director’s …
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Large-scale replicated field study of maize rhizosphere identifies heritable microbes
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JGI Welcomes New UEC Members
… a breadth of institutions, research topics and career stages. The election period concluded on October 21. The results are in and JGI extends a warm welcome to the … To view the full roster of members visit the UEC page . …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
SIP allows researchers to go beyond understanding which microbes are present in a sample, to generate data about … version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive isotope … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host …
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Partnerships: Adopt-A-Genome
Adopt-a-Genome has:  11 CSU educators working with the JGI 120 genomes claimed (or about one per student) Seven … some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them … datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes …
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Natural Prodcast Episode 9: Roger Linington
Yeah, that’s right. We were postdocs together in the mid 2000s, I guess. You were working for Brad Moore. I was … the idea that you could go internationally to do the next stage of your training and that there might be more to be … how best to begin. And so in the end, we did it in several stages. So we started out internally by making a list on the …
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