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Metabolomics
… this identification, metabolomics enables functional genome annotation, improves understanding of the role small molecules play in diverse biological … samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as different types …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … studied? Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, … to soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene regulatory …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … for a long time by many, many bacteria – and fungi and plants. And so that’s the power and the promise of, I guess, …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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Better Crops With a Pointillist Approach to Plant Genomics
In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and more. And …
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Natural Prodcast Episode 16: Marcy Balunas
And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … of her work on molluscs and their cyanobacterial feeding preferences A 10″ Simple Rules” article on increasing …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … ag[riculture] and I really liked – I became interested in plant disease in part because of what happened in my Peace …
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