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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … with grants funded by DOE-BER requiring support from the JGI may  submit proposals here . Investigators … Collection Network (USCCN) to nominate their strains for sequencing, as long as they have a scientific question …
Learn more
CSP Large Scale Call
… genomic science projects that address biological functions for biomanufacturing, critical minerals and materials, … All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance, proposed data … and track record of the applicant. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …
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Genome Insider
… The Genome Insider podcast brings listeners into the science … — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. Listen in to …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to … This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, nutrient cycling and … platform enables users to validate hypotheses generated from mining genomic data by designing and assembling …
Learn more
Uncovering Novel Genomes from Earth’s Microbiomes
… a small fraction of Earth’s microbial diversity. Because most microbes cannot be cultivated under laboratory … repository of 52,515 microbial draft genomes generated from environmental samples around the world, expanding the … and environments, including natural and agricultural soils, human- and animal-host associated, and ocean and other …
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DOE Metrics
…     2,208     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … Hours reflect a delay in implementation of the LIMS from Q2 to Q3. As a result of the delay in the LIMS …
Learn more
CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. … pilot data to assess feasibility of a novel approach or form the foundation for a large-scale CSP proposal … an unlimited number of proposals).  For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …
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Cataloging the Microbes that Manage the Health of River Systems
… researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the … its quality and in turn affecting environmental and human health, energy production and agriculture. Understanding the compositions of river microbiomes—who the core microbes are and what they do—can …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… 16, which contains about 3% of the human genome. They wanted to learn about the genes implicated in the … years. The DOE brought together the people and resources from these three national labs to form the DOE Joint Genome … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Fungal Friends or Foes in Plant Roots
… fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified … break down plant sugars. The results also revealed that the most beneficial fungi in root mycobiomes weren’t necessarily … Fungal Genomes project can enable studies of plant root microbiome and other microbiomes by providing reference …
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A Catalog of Reference Genomes from the Human Microbiome
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Applying Viral Genomics Expertise to Understanding the Human Virome
… the National Institutes of Health’s (NIH)  Common Fund Human Virome Program .  Nikos Kyrpides , head of the JGI’s  Microbiome Data Science , leads one project with JGI … is led by a team of highly experienced investigators from institutions including the University of Maryland and …
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