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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … with JGI users for analyzing viral datasets, and the organization of community-building efforts in the field of … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Data Ecosystem
… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … the team concluded, “we provide a global analysis of the diversity, distribution, and evolution of virophages.” Lead …
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2025 NeLLi Symposium
… and Agenda Coming Soon!  Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and … define, quantify, and functionally characterize microbial diversity. The Symposium will also focus on experimental … cultivating new Bacteria and Archaea revealed by a recent genome census . Speakers John M. Archibald (Keynote) …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, advancements … technologies have led to an abundance of microbial genomes becoming available to the global research … , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … and developed new tools to map that soil RNA to fungal genomes.  The U.S. Department of Energy (DOE) Joint Genome … and Environment (INRAE). Remarkable Similarity Despite Vast Diversity For this study, researchers collected soil samples …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … out with plans for itself over time – ALISON: Like any good organization does! DAN: Like any good organization does, and … to be here and be able to discuss this incredible, natural diversity that we have at our fingertips. So I’m very …
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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A Genome-Wide Survey of Switchgrass Genome Structure and Organization
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JGI@25: Using Team Science to Build Communities Around Data
The 1KFG project represents affiliations at over 180 organizations in 29 U.S. states and 35 countries. (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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