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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the … photosynthesizing organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for … including the tropics, tend to be dominated by prokaryotes (microorganisms without a defined nucleus). Colder waters …
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Metabolomics
… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that influence system behavior.  Through … JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using …
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Anaerobic gut fungi are an untapped reservoir of natural products
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … covering the entire kingdom of fungi. “The information from this project may also have a practical relevance with …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga … in the ocean; this affects the growth and survival of the microorganisms that live there.  A  Communications Biology article highlights how one microalga collected from water on the ice surface handles such fluctuations. P. …
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Uncovering Novel Genomes from Earth’s Microbiomes
… for multiple applications.       Despite advances in sequencing technologies and computational methods in the … microbial diversity is key to understanding the roles of microorganisms in regulating nutrient cycles, as well as … [metabolic modeling], but they might be interested in how biochemistry impacts what they work on. The genomics …
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Massie S. Ballon
… other JGI-relevant content on social media. She is also involved in the JGI’s community outreach efforts. Ms. Ballon has a degree in molecular biology & biochemistry from Wesleyan University, and a graduate certificate in …
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Prediction, enrichment and isolation identify a responsive, competitive community of cellulolytic microorganisms from a municipal landfill.
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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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JGI Portals
… and require constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal … genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** … Hours reflect a delay in implementation of the LIMS from Q2 to Q3. As a result of the delay in the LIMS …
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