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2024 Progress Report
Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab …
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An Integrated Dataset to Understand Ecosystem Interaction
… were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). All of this information … No. DE-AC02-05CH11231. The work conducted by the National Microbiome Data Collaborative ( https://ror.org/05cwx3318 ) …
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Natural Prodcast Episode 21: Elizabeth Parkinson
Parkinson! JACKIE: Well, welcome. Dr. Betsy Parkinson is joining us today who is an assistant professor at Purdue … them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or … And once we figure that out, we have designed GFP based plasmids where we can actually then put these in E. coli and …
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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth … metabolites. He is also on the Leadership Team of the National Microbiome Data Collaborative and served as President of the …
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Natural Prodcast Episode 16: Marcy Balunas
And so I ended up as a postdoc Panama as part of the international cooperative biodiversity group (ICBG) based in … massive problems just as much as it brings about massive data into really interesting ways to look at our systems. … the podcast produced by the US Department of Energy Joint Genome Institute, a DOE Office of Science user …
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JGI at the AGU Fall Meeting
… unless otherwise noted): December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research … Lab (short talk): “How do we make interdisciplinary sample data more FAIR?” December 16 7:55am, Convention Center Rm …
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Single Cell Research Group
… high value to establish models and hypotheses, experimental data is critical to further test such hypotheses. In … N. N., Kelly W. J. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.” Nat … B.P., Tsiamis G., Sievert S.M., Liu W.T., Eisen J.A., Hallam S.J., Kyrpides N.C., Stepanauskas R., Rubin E.M., …
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An Automated Tool for Assessing Virus Data Quality
… virus sequences vary widely. In a previous effort, an international consortium recommended specific guidelines and best … , a team from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group led by Nikos Kyrpides. To …
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Kjiersten Fagnan
… flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … conference, SC’18, led by researchers at Oak Ridge National Laboratory. Dr. Fagnan has been the Distinguished … management. Dr. Fagnan is also a co-PI for the National Microbiome Data Collaborative where she leads infrastructure …
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Environmental Genomics Group
Team    … Nayfach S et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. Vyshenska, … Nayfach S et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. doi: …
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2022 Progress Report
Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… to cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), embarked on a pilot … Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was …
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