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… Most of those researchers send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — …

… more about how JGI data supports higher education in this JGIota , a Genome Insider podcast minisode.)  “The ultimate …

… the next few months, you’re going to hear my last interview with my co-host Alison Takemura, who’s moved on from JGI to … Science program. It used to actually stand for Community Sequencing Program. Also CSP, same acronym. But as JGI, as a … facility, evolved, and as we started to do more than just sequencing, we thought the name community sequencing program …

… livestock — specifically, from the methane-making microbes within their rumen. There is another climate-minded reason … Kelly and Sinead Leahy and the JGI’s Rekha Seshadri in this JGIota, a Genome Insider podcast minisode. To date it is the … different areas, beyond the project’s initial scope. Sequencing and culturing this vast collection of rumen …

… and we talk about an ongoing project I’ve been working with him on as an exploration into the secondary metabolism … territory for us, and I’m grateful to be working with him, and so happy we got the chance to record this … that this episode will be monumental as the last episode with Alison as my co-host. We recorded this an awfully long …

… – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, … metabolism – field, though, is real, and it’s a field with very real and truly amazing science with a long … the JGI. And so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and …

… harness the traits that let this biomass powerhouse thrive. Within its genome, Sorghum bicolor holds keys to drought and … at the HudsonAlpha Institute for Biotechnology Genome Sequencing Center and a member of the JGI Plant Program. … Plant Science Center. Collaborators benefitted from sequencing resources as part of the Community Science …

… 2 of our “primer” episode, so if you ended up here somehow without having listened to the first part, you might be a … is similar to primary metabolism. So if you were, you know, sequencing an organism for the first time, and you’ve never … more knowledge you can generate. So that’s why we are still sequencing lots of stuff, and why the JGI is a key driver in …

… Department of Energy (DOE) Bioenergy Research Center, along with researchers from the Energy Biosciences Institute, the … Center for Biotechnology. Most plants are diploids with two copies of each chromosome, one inherited from each … contribute to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these …

… genomic breeding in these crops. For diploid species, sequencing programs generally focus on a genotype with two identical sets of chromosomes to produce a … hampered by the crop’s highly polyploid genome, which makes sequencing and assembly of the genome extremely challenging. …

… Earth’s climate. Most methane is produced in environments without oxygen through a process called methanogenesis. … to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the … methanogens were, but they were discovered by genome sequencing, which is a much less biased approach to studying …