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JGI-USCCN Strain Sequencing Opportunity
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Natural Prodcast Episode 18: A CSP Primer
… the next few months, you’re going to hear my last interview with my co-host Alison Takemura, who’s moved on from JGI to … Science program. It used to actually stand for Community Sequencing Program. Also CSP, same acronym. But as JGI, as a … facility, evolved, and as we started to do more than just sequencing, we thought the name community sequencing program …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… more about how JGI data supports higher education in this JGIota , a Genome Insider podcast minisode.)  “The ultimate …
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Natural Prodcast Episode 1: The Primer, Part 1
… – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, … metabolism – field, though, is real, and it’s a field with very real and truly amazing science with a long … the JGI. And so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and …
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JGI Portals
… all JGI genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data … access to information regarding genome and metagenome sequencing projects, and their associated metadata, around … over 15 million viral genomes and fragments, enriched with functional annotation, taxonomic classification, and …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… livestock — specifically, from the methane-making microbes within their rumen. There is another climate-minded reason … Kelly and Sinead Leahy and the JGI’s Rekha Seshadri in this JGIota, a Genome Insider podcast minisode. To date it is the … different areas, beyond the project’s initial scope. Sequencing and culturing this vast collection of rumen …
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DNA Synthesis Program
… been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and environmental … and biosystems. It The program fosters collaboration with U.S. and international scientists to drive innovations that align with DOE's missions. … The DNA Synthesis Program plays a …
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A Grass Model to Help Improve Giant Miscanthus
Department of Energy (DOE) Bioenergy Research Center, along with researchers from the Energy Biosciences Institute, the … Center for Biotechnology. Most plants are diploids with two copies of each chromosome, one inherited from each … contribute to novel traits. M. sinensis is a tetraploid, with four sets of chromosomes; the study showed that these …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
Earth’s climate. Most methane is produced in environments without oxygen through a process called methanogenesis. … methanogens were, but they were discovered by genome sequencing, which is a much less biased approach to studying … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Synthesis
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Natural Prodcast Episode 2: The Primer, Part 2
… 2 of our “primer” episode, so if you ended up here somehow without having listened to the first part, you might be a … is similar to primary metabolism. So if you were, you know, sequencing an organism for the first time, and you’ve never … more knowledge you can generate. So that’s why we are still sequencing lots of stuff, and why the JGI is a key driver in …
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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when … of the human genome project in 2003, he developed sequencing, assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to …
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