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MycoCosm portal: gearing up for 1000 fungal genomes
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SPRUCE-ing Up Science
… places like Minnesota for example, despite taking up only about 3% of the planet’s landmass, peat moss and … mentor to present his project work and navigate a follow up question and answer session. “A great presentation not … rounds of virtual interviews, Lawrence joined the SPRUCE team, which aims to predict what might happen to the carbon …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… tough cell wall materials that keep microbes — and the enzymes that would be produced by microorganisms — out,” … these organisms use to bust biomass apart. She and her team find these fungi, and their enzymes, primarily in … for anaerobic fungi . Eventually, it’s possible that fungal communities — or enzymes from fungal communities — …
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JGI Advisory Committees Code of Conduct
… collaborative environment free of harassment. To uphold Berkeley Lab’s enduring 90-year legacy of team science—bringing science solutions to the world—and to … possible conflicts of interest to the JGI Leadership Team (JLT) that may compromise your ability to serve at your …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match characteristics — … organism processes both carbon and nitrogen. This research team combined computational and experimental approaches to … that we studied are involved in transfer of the amine group, or the N group, to a variety of different molecules. So …
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Natural Prodcast Episode 12: Nadine Ziemert
Yeah, we’re doing this from home. And my own podcasting setup– and yours, too, Dan. DAN UDWARY: Yeah, you’re looking … And then you search for – re-search for these biosynthetic enzymes that we think must be similar within the fosmid … that I interviewed recently about how she was leading this team effort to sequence microbiomes of rivers around the …
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Programs & Platform Leads
… drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, …
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Scaling Up Existing Skill Sets
… graduate student Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer … During my internship, I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt … outside of the area of focus of most of the rest of the group, which made it feel like I had something tangible to …
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Igor Grigoriev
… the pharmaceutical industry. He holds joint appointments as Fungal and Algal Program Head at the DOE Joint Genome … in the JGI MycoCosm portal. In 2018, he launched scale-up of algal genomics and PhycoCosm portal. Dr. Grigoriev … 331: 555-561. Ohm RA et al. Formation of mushrooms and lignocellulose degradation encoded in the genome sequence of  …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… for example, crop and ornamental seeds sold for the upper Midwest are often very different than those bred for … States. As  reported January 27, 2021 in  Nature , the team led by researchers at the University of Texas (UT) at … field data and genetic information has allowed the research team to associate climate adaptations with switchgrass …
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Evolution of a Fungal Gene Expression Regulator
… their genomes, but is not well understood in fungi. A team of researchers reported on the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species … Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the US Department of …
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Tracing the Evolution of Shiitake Mushrooms
Within those samples, this study also tracks the enzymes these fungi use to break down wood, and compares genetic diversity between … mushrooms are white rot fungi, belonging to an elite group of decomposers that can break down all of wood’s …
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