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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, … in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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JGI Advisory Committees Code of Conduct
Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to … In working toward a shared vision with members of the JGI advisory committees, we welcome and encourage …
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Logos and Templates
The JGI Style Guide offers tips on JGI logo usage - please follow these …
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Micro-Scale Applications Group
Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge … To provide additional functional insights into microbial genomes, the JGI now uses laser microdissection to …
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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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Natural Prodcast Episode 16: Marcy Balunas
… know that that’s ever necessarily like a good description of anyone because chemistry means a lot, especially when … the traditional sort of academic path or even just the scientific path of “I know exactly what I’m going to do and I’m … tell us about this squid-microbe relationship. Or is it a microbial community with microbial community relationship?  …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a … Nobel Foundation as having “a revolutionary impact on the life sciences.” Building upon CRISPR-Cas9 work, the Doudna … Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense …
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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … did those sequences go? Like, what are the other scientific tools we offer people? TANJA WOYKE: Yeah. Also a really good …
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Science Programs
The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the scientific impact of user projects, develop cutting edge … approaches for and with users, and create computational tools and resources for them. Their concerted efforts help …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of …
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Partners
… our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA … facilities (e.g., the National Energy Research Scientific Computing Center (NERSC) and data infrastructure … (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional … Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly …
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