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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, … offers a way for users to more easily access public data sets through a common set of metadata. For Steve Wilson, … through a kingdom portal (assemblies + annotations) For IMG & Mycocosm: Data that is associated with an ITS project …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … complete or near-complete viral genomes across both datasets, separating these from the vast majority of other … CheckV on IMG/M Data portal … Datasets …
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Natural Prodcast Episode 1: The Primer, Part 1
… Secondary Metabolites Science Program here at JGI. It’s a new group formed under the director who has also got a long … so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify … at archive.jgi.doe.gov/user-programs . Thanks, and see you next time!  …
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Biodesign
… group dedicated to user project design, assembly, and quality control Strain Engineering Group : a research & development group and focused on new technologies and optimizing tools — including strain … Synthetic Biology Informatics Group : a team that develops data science tools for workflow management and novel …
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How to Submit Sequencing Samples
… needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing … have any questions, please contact your Project Manager or jgi[email protected] . … protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting step for many projects at …
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User Programs
… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials Status CLOSED CLOSED …
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User Advisory Committees
… the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley … stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in this Code of Conduct. … The UEC represents the JGI user community and is responsible for providing input …
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University of California, Merced Internship Program
… Merced graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to … students have contributed to the research of numerous JGI scientists. Interns say their experiences allowed them to:  Learn new skills. Experience industry-level work and coding. …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of … molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … program integrates cutting-edge metabolomics with genomic data to gain insights into how small molecules function …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge … and bioeconomy applications. The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by …
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Micro-Scale Applications Group
… of cutting-edge approaches.  Our group also seeks out new approaches that utilize microfluidics/microdroplet … technology in order to enhance the quality of single-cell genomes and directly link functional … The JGI uniquely offers the first quantitative Stable Isotope …
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CSP Large Scale Call
… that are listed in the call and leverage the diversity of JGI technical and analytical capabilities. All proposals … for scientific merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of … free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. …
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