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Partnerships: Myco-Ed
… train students and professors in laboratory techniques and data analyses compile original data for improving fungal genomic resources empower students … fungi, sterilize tissue, isolate genes and more. The metadata then goes into iNaturalist. Myco-Ed has:  ~50 lineages …
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A Guide to Conquer the Biological Network Era Using Graph Theory
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Plant Microbial Interactions Group
… by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and … characterization methods, in addition to bioinformatics tools to elucidate phage function in this tripartite … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …
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Frequently Asked Questions: Project Management
… The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , … The “User” signing the JGI User Agreement will be an authorized representative from … institution (usually a legal counsel representative). The User Agreement and corresponding Appendix must be signed and …
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Natural Prodcast Episode 11: Marnix Medema
… center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, … there is many. I would say, perhaps, half of or more of the users of antiSMASH are not in this field either. So they …
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Protocols
… Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA …
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Natural Prodcast Episode 14: Nigel Mouncey
… had in my group which was bioengineering bio-process R&D, BBRD, a group of about 75 people. So our biggest project was … using these together along with all of our computational tools to really build out much more of an integrative … heard me speak recently have heard me talk about the new data portal that we’re building. And I’ve been eager to …
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Synthetic Biology Informatics Group
… CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic …
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale AI-ready data and professional expertise to support the global … this mission by enabling large-scale genomic discoveries, data integration, and AI-driven analyses that convert …
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Bidirectional titration of yeast gene expression using a pooled CRISPR guide RNA approach
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CSP Large Scale Call
… for scientific merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of … of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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Comparative transcriptomics as a guide to natural product discovery and biosynthetic gene cluster functionality
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