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Evolution of a Fungal Gene Expression Regulator
… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures and … which may help the pathogens evade a plant’s defenses. Understanding the role of transposons and 5mC in fungi could … that unlike most flowering plants and animals, fungi lack gene body methylation. The analysis revealed that 5mC in …
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Mutant phenotypes for thousands of bacterial genes of unknown function
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Raman-based sorting of microbial cells to link functions to their genes
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An Integrated Dataset to Understand Ecosystem Interaction
… value as both biofuel feedstock and their role in carbon sequestration. Poplar trees grow quickly in a variety of … the trees, microbes and soil chemistry offers insights into how these ecosystems cycle nutrients like nitrogen and … surroundings — illuminating the molecular mechanisms for adaptation within the trees. The data set generated is 25 …
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Micro-Scale Applications Group
The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a … access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated … (BONCAT+FACS). To provide additional functional insights into microbial genomes, the JGI now uses laser …
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Frequently Asked Questions: Proposal Submission
… from any institution type and at any career stage. Generally, most users are able to work with Berkeley Lab.  … for advice!      … The deliverables can range from raw sequence data to well-annotated assembled genomes to … contact us in advance for advice. … For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …
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CalTeach
… for undergraduate majors interested in developing a deep understanding of STEM teaching & learning. Their coursework …
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2024 Progress Report
… 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed … We have also scaled DNA-affinity purification sequencing (DAP-seq),  stable isotope probing (SIP) and omics, and we … genomic innovation to provide the foundational biological understanding that opens up new ways to harness biology. …
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Community Science Program
… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for … call is for projects that translate genomic information into biological function. The  New Investigator and … the completion of a project, the JGI makes the assemblies, gene annotations, and analyses available to the community at …
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Metabolomics
… metabolomics enables functional genome annotation, improves understanding of the role small molecules play in diverse … products At JGI, in-depth molecular profiles are generated for metabolites extracted from a variety of …
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Denoising inferred functional association networks obtained by gene fusion analysis
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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