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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community … Institute and the collaborative projects funded through the CSP program. In addition to continuing to develop strategies …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , … genomics studies, offering insight into genes critical for roles including plant growth and cell wall development.  M. … Research Council under the European Union’s Horizon 2020 research and innovation program (grant agreement no. …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was preceded by short final … I was so impressed with the work everyone has done.” The 2020 JGI-UC Merced interns and mentor/s: Brendan Blasius & …
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … to predict or just understand better the language of microbial cell-cell communication. And he told us about his … DAN: Almost like you know that there is. AARON PURI: It’s a planted question Dan. Yeah. So overall I think what we’re …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … development and how they determine identity, as well as the roles played by neighboring cells in these processes.   One … the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s … values, which guide the relationships we nurture in our workplace and seek to establish with our … the JGI user community and is responsible for providing input and advice on JGI policies and practices that …
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What Happens To a Rainforest When You Dial Up Drought?
… Rainforests store a big fraction of all the carbon on Earth, and soil microbes play a key role in pulling that carbon out of the atmosphere. This episode, … at what happens to that storage when a rainforest hits a drought. Tag along with their experiments in a fully …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has … results in seeing their predicted functional and metabolic roles across global metagenomes (within IMG).  The Impact …
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A Collaboration to Improve Plant Genome Annotations Across Species
… and PPRD could help with understanding gene functional roles, but the experimental inconsistency makes … to standardize the experimental protocols. Then, in 2020, seven more groups joined the project to contribute to … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … the special, natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. … right. So I did a PhD in microbiology at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about … and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have … This the second episode of Natural Prodcast, which continues a conversation from the first episode . You can go to …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have developed a … research programs for developing methods for converting plant biomass into sustainable fuels for cars and jets. By … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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