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JGI announces 2023 CSP Functional Genomics awardees
… users who need help translating genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that … leverage the JGI’s DNA synthesis and omics capabilities to enhance understanding of gene and genome function.  Below …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that … also the chair of the JGI User Executive Committee, on how that study went from the lab to the classroom. …
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Industry Engagement Program
… than 2,500 users that predominately come from the public sector: academic and government institutions — with … largely unknown and underutilized by industry. When Director Nigel Mouncey joined the JGI in 2017, he brought with … him 20 years of industry experience — and an opportunity to expand the JGI’s portfolio of user companies. Now the …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of … highlights our skewed understanding of microbial metabolism towards a minority of cultivated bacteria, still persists to … Phylogenetic diversity estimates show that the gap between cultivated and uncultivated …
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FICUS
… call represents a unique opportunity for researchers to request the capabilities and expertise of multiple DOE … focus on high-risk/high-payoff proposals within the focused topic areas that can be completed on an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range …
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How Maize Makes An Antibiotic Cocktail
… at least 15 zealexins, they suspect there are even more to find. Zealexins are produced in every corn variety and … Science Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  … the bioenergy crop switchgrass. The team confirmed just how important zealexins are to maize health. Infections with …
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JGI Portals
… enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data … algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. Book a …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… Congratulations to Susannah Tringe , one of eight scientists and engineers who received the 2020 Ernest Orlando Lawrence Award , one of DOE’s highest … emissions, and water recycling.” Tringe is the interim director of Berkeley Lab’s Environmental Genomics and Systems …
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The Fungi That Survive In Antarctica
… Black fungi are microscopic and mighty. They survive everywhere from Antarctica to Joshua Tree National Park, despite extremely harsh … with scientists from around the world – and the JGI – to understand them better. …
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From Competition to Cooperation
… 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently evolved to establish symbiotic … the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a … was done to gain insights into gene families involved in adaptations seen in later plant lineages. The team found … mechanisms they had identified. For example, in comparing how liverwort and flowering plants had adapted to their …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … bacteria play on mating habits of Mucoromycota fungi, and their effects on these oil-producing species. … in learning more about the fungal endophytes of soybean and how they deter two significant pathogens, the soybean cyst …
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