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FICUS
… on an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range … the capabilities across at least two of the facilities, and generate datasets beyond what each of these facilities could generate by itself.   Accepted projects must address or be …
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Metabolomics
… products At JGI, in-depth molecular profiles are generated for metabolites extracted from a variety of … experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as …
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Duplications and losses in gene families of rust pathogens highlight putative effectors
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From Competition to Cooperation
… had ever been done before to look at how multiple forest fungi have independently evolved to establish symbiotic … the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems … Research Council under the European Union’s Horizon 2020 research and innovation programme under grant agreement …
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Metagenome Program
… along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … of viral, microbial, and microeukaryote genomes and mobile genetic elements, linked to custom interfaces and … We leverage  genome-resolved metagenomics and targeted gene searches to expand representation of uncultivated …
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Work With the JGI! Tips for a Winning CSP Proposal
… project manager Miranda Harmon-Smith, who helps shepherd CSP projects along. …
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Natural Prodcast Episode 2: The Primer, Part 2
… bacterial sacred metabolite, and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have secondary … that produces those. So it’s not a hard and fast rule, but, generally, animals do not have secondary metabolism that we …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The … teems beneath your feet. Both bacteria and fungi have genes that can break down plant fibers. But are they both … (transcriptomes) from their soil samples. This gene expression dataset was particularly important for …
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DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor
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Combinatorial Regulation of Endothelial Gene Expression by Ets and Forkhead Transcription Factors
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High-quality RNA extraction and the regulation of genes encoding cellulosomes are correlated with growth stage in anaerobic fungi
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Gut Fungi: Unexpected Source of Novel Chemicals
Fungi from herbivore poop make surprisingly complex … thought to be too costly for them. The Science Anaerobic fungi, which die in the presence of oxygen, dwell in … Swift — verified that the fungi expressed biosynthetic gene clusters, which are “building blocks” of natural …
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