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… said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … Berkeley is interested in better characterizing the role endosymbiotic bacteria play on mating habits of Mucoromycota fungi, and their effects on these oil-producing species. …

… the required capabilities, they then ship samples—such as DNA and RNA for sequencing—to JGI. Users are responsible for … assemblies or differential gene expression results. For DNA synthesis projects, JGI ships physical materials like … which it becomes publicly available. If you're requesting DNA synthesis from JGI, there's also a material transfer …

… analyzing and harnessing genomic information from plants, fungi, algae, non-medical microbes, microbial communities, … was created in 1997 to unite the expertise and resources in DNA sequencing, informatics, and technology development …

… or fungal metabolism by microbes, will have a functional role. We started from that. Evolution doesn’t invent stuff … that people are using in the clinics were kind of kidnapped from nature without paying attention to the … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …

… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the “chytrids”).  A collaborative … multiple times in order to obtain enough zoospores. DNA and RNA samples generated from the zoospores were then … remained largely untouched until seven years later. In 2018, as members of the ZyGoLife consortium , my colleagues …

… The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall … Program through a proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is aimed at determining … method for identifying protein binding sites in DNA by DNA Affinity Purification, developed and optimized …

… genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and omics capabilities to enhance …

… on an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range … technologies available at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with …

… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, … The best-known example of a modified DNA base is a methylation of the base cytosine at the 5th position on its … the pathogens evade a plant’s defenses. Understanding the role of transposons and 5mC in fungi could help researchers …

… Pro Tips for Successful Community Science Program (CSP) Applications Webinar inviting researchers to submit white papers to the CSP  New Investigator call for proposals.  Tips: Contact us … if you have questions about how KBase can support your CSP data. The proposal call is open year-round, but …

… Nancy Hammon Workflow Planning Manager Miranda Harmon-Smith DNA Synthesis and Single-Cell Genomics Vivian Ng Fungal …

… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences … , the team found that fungi are playing a bigger role in soil decomposition processes than expected. The …