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… analyzing and harnessing genomic information from plants, fungi, algae, non-medical microbes, microbial communities, … access to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics through its data portals. …

… experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as …

… genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that …

… habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … remained largely untouched until seven years later. In 2018, as members of the ZyGoLife consortium , my colleagues … these diversification events occurred approximately 650 million years ago, and that the first terrestrial fungi …

… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … a terabase — of soil RNA for this project, and produced the reference genomes that allowed for mapping these RNA reads. … said, the 1000 Fungal Genomes project, together with other CSP projects, had sequenced over 2,000 fungal genomes. The …

… the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the … of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these … The Open Green Genomes Initiative is the product of a 2018 Community Science Program proposal from James …

… Sorghum genome serves as a reference for the highly complex sugarcane genome . The … of chromosomes (they are “polyploid”) and their complex genomes are more difficult to sequence and assemble, in turn … now underway as part of the JGI Community Science Program (CSP), a critical factor in developing sugarcane as a …

… The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall … of sustainable biofuels and bioproducts. Filamentous fungi are also being used in the biotechnology industry to … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …

… the secondary metabolism side of things was looking at genomes and seeing where the really hard things to sequence … curious about what they were, what they were doing in these genomes and how they change over time. And yeah, I mean, … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …

… and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific … For counting: text file of gene counts (mapped against reference transcriptome or de novo assembly), DGE, alignment … For counting: text file of gene counts (mapped against reference transcriptome), DGE, alignment files 134/134 Viral …

… And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got me into that because we had these new genomes that JGI had sequenced that were of these bacteria …

… Plant Flagship Genomes are selected through discussion with the JGI Plant … Advisory Committee and DOE, designating a set of JGI plant genomes that are the most important to DOE mission and plant … datasets to further gene function research. The  Open Green Genomes (OGG) project seeks to develop comparative high …