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FICUS-NERSC/KBASE
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Ancient Algae Reveal Secrets of Plant Evolution
… three strains of  Zygnema circumcarinatum . Published  May 2024 in  Nature Genetics by an international research … the Joint Genome Institute Community Science Program (CSP), the United States Department of Agriculture (USDA) …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these …
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Natural Prodcast Episode 2: The Primer, Part 2
… to the second episode of the Natural Prodcast. This is part 2 of our “primer” episode, so if you ended up here somehow … molecules and their discoveries over a stretch from 1940 to 2000. As you can see, from the 1940s, into the 50s into the …
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Plant Pan-Genomics Comes of Age
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Viral Genomics Group
Genomics group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host prediction … phages.  Current Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions — how big …
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From Competition to Cooperation
… genomes of symbiotic species available: 73 saprotrophs and 62 mycorrhizal species. The 62 mycorrhizal species include 29 … the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems project (CSP # 570) and the 1000 Fungal Genome projects (CSP # 662 & …
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Natural Prodcast Episode 8: Eric Schmidt
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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He has a … DOE National Laboratories, the Community Science Program (CSP), and external collaborations. The Director ensures the … provides health and safety oversight at the JGI, and plans for the development of future capabilities. …
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Secondary Metabolites Program
… of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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A Collaboration to Improve Plant Genome Annotations Across Species
… plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to … we are looking at 18 different species, which included over 2000 RNA Seq libraries. As I previously mentioned, this is … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function …
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The JGI announces 2024 awardees for our Community Science Program annual call
… excited to announce the fifteen scientists selected for our 2024 Community Science Program Annual Call. “It’s exciting to see the diverse portfolio of successful CSP proposals this year,” noted Tanja Woyke, who heads JGI’s … and I look forward to seeing their outcomes.” The annual CSP call is focused on large-scale genomic science projects …
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