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Bipartite graphs in systems biology and medicine: a survey of methods and applications
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A Taxonomy of Bacterial Microcompartment Loci Constructed by a Novel Scoring Method
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A Simple and Versatile Cell-Free Expression Method for Producing Secondary Metabolites
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Kjiersten Fagnan
… a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research Division. As a postdoc, her research focused on stable and accurate computational methods for reacting subsurface flows, and evolved into … direction for the overall design and implementation of computational biology and bioinformatics approaches in …
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Assemblathon 1: A competitive assessment of de novo short read assembly methods
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Global overview and major challenges of host prediction methods for uncultivated phages
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An expanded evaluation of protein function prediction methods shows an improvement in accuracy
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A robust gene-stacking method utilizing yeast assembly for plant synthetic biology
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Computational Strategies for Scalable Genomics Analysis
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific …
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DOE Metrics
… hours. Other DOE Quarterly Metrics Q1 – Report on new computational developments for improving microbial, … or metagenomic datasets. [Download PDF] Q3 – Report on new computational approaches for the annotation of genomic data. [Download PDF] Q4 – Report on a new computational method for improving the interpretation of …
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Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
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