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Publication Policy
… (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …
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Partnerships: Myco-Ed
… genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ … solution for production of high-quality fungal reference genomes, this program is an important initiative that …
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Secondary Metabolites Program
… factors and determine their binding sites across multiple genomes. Computational prediction of heterologous … computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, … The SMC provides complete sequence and annotation data for secondary metabolite …
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Decontamination of MDA Reagents for Single Cell Whole Genome Amplification
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JGI@25: Strengthening Soybean
… and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … first legume species with a published complete draft genome sequence. At the time, the vital global source of both … due to the sequence’s availability via Phytozome. In 2015,  a new and revised version brought the soybean …
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JGI@25: Roots of a Mutualist Relationship
… energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published … of ectomycorrhizal fungi, excerpted from his talk at the 2015 JGI Annual Meeting:   Francis Martin on how JGI has … Genome Inside: THE Bioenergy Tree …
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CSP New Investigator Call
… the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to … leaves, a team of researchers sequenced  P. trifoliata ’s genome. Scientists at the US Department of Energy (DOE) … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Natural Prodcast Episode 18: A CSP Primer
… Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we …
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Improving the Cacao Genome and Phytozome
… will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … released by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team at the  HudsonAlpha …
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2025 NeLLi Symposium
… students and postdocs): $250      Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and … discoveries toward the evolution of cellular complexity and microbial symbiosis.  This is a continuation of the previous … metabolic and functional capabilities. Take part in the "Sequences to Cultures" Jamboree!  Immediately following the …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… first sampled the area in summer 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal … and Higher Education at Ensenada (CICESE) in her first microbial ecology paper in the journal PLoS One . “Puerto … UC Merced graduate students who participated in the Summer 2015 research experience at the JGI as part of an education …
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