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JGI@25: Roots of a Mutualist Relationship
… energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published … of ectomycorrhizal fungi, excerpted from his talk at the 2015 JGI Annual Meeting:   Francis Martin on how JGI has …
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Accelerating Metagenomics Discoveries with Deep Learning
… biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying …
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JGI@25: Strengthening Soybean
… and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … first legume species with a published complete draft genome sequence. At the time, the vital global source of both … due to the sequence’s availability via Phytozome. In 2015,  a new and revised version brought the soybean …
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Examples: Successful LOIs & Submissions
… genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during …
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Secondary Metabolites Program
… factors and determine their binding sites across multiple genomes. Computational prediction of heterologous … computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, … of horizontal gene transfer. … The SMC provides complete sequence and annotation data for secondary metabolite …
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Decontamination of MDA Reagents for Single Cell Whole Genome Amplification
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to … leaves, a team of researchers sequenced  P. trifoliata ’s genome. Scientists at the US Department of Energy (DOE) …
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Plant-Microbial Interactions Group
… including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered …
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal … tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for …
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Partnerships Development Team
… technology called chassis-independent recombinase-assisted genome engineering (CRAGE), which offers single-step genomic …
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2025 NeLLi Symposium
… and Agenda Coming Soon!  Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and … discoveries toward the evolution of cellular complexity and microbial symbiosis.  This is a continuation of the previous … metabolic and functional capabilities. Take part in the "Sequences to Cultures" Jamboree!  Immediately following the …
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DRAM for distilling microbial metabolism to automate the curation of microbiome function
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