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Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in Populus
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JGI Mural
… The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references dozens of iconic … to advancing the frontiers of environmental and energy genomics. Click on the images below to learn about the …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Waiting to Respire
… Facility, and research scientist Frederik Schulz in Woyke’s Single Cells group had generated and analyzed single amplified genomes of Margulisbacteria from marine … samples. The research teams opted to collaborate on a single study, with Matheus Carnevali and Schulz sharing …
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Finding the Fermenters
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… user facility. The staff and resources shifted to offering genomic science capabilities for energy and environmental …
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How to Target a Microbial Needle within a Community Haystack
… the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of microbes that … a target, HCR-FISH attaches multiple fluorescent tags to a single binding site, resulting in target cells that give off …
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Computationally Classifying Fungal Lifestyles
… Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes includes … The data allowed the team to reclassify 25  Dothideomycetes species, and also provides more information about speciation …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… archaeal lineages, the team relied on a combination of phylogenomic analyses, transcriptomics for microbial genomic activity (gene expression), and direct microscopy. … , the team used metagenome assemblies, transcriptomes and single amplified genomes from samples collected from several …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen interest in the bioenergy and … of this field and bring it to the attention of the wider genomics community. Jan. 13 workshop: BER Plant Genomic …
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Open Frameworks Training the Next Generation of Scientists
… higher education that develops skills in fungal biology and genomics.  Myco-Ed :  The Mycological Curriculum for … 316 students in fungal biology, bioinformatics, and genomics.  The Impact For decades, the Department of Energy … for students developing skills in fungal biology and genomics. Fungi can be better understood through reference …
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Gut Fungi: Unexpected Source of Novel Chemicals
… . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this group is … of Science National User Facilities , with the stroke of a single proposal. The next step for the team was to try to …
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