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… approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which … sequences.  Further analysis led to the identification of 328 “high quality” (based on completeness) diverse new …

Paula Matheus Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed Margulisbacteria, … researchers from the Bigelow Laboratory for Ocean Sciences, Microbial Genome Program head Tanja Woyke of the U.S. …

Metagenome-assembled archaeal genomes provide new insights … issue of Nature Microbiology , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained … the oldest metabolisms, with the first traces possibly at ~3.5 Gy (billion years),” Borrel and Gribaldo said in an …

… article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell … sequence reads to link mobile elements such as plasmids to microbial host cells. In a separate article, research …

JGI Mentors : Ben Cole & Axel Visel, Genomics of Plant-Microbial Interactions “The summer internship has further …     Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and …

… paper in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists … from environmental samples — to identify over 27,000 microbial genes. These genes were identified based on their …

Science Foundation (NSF) CAREER award (DBI-1652164, 1933521), the Nebraska Tobacco Settlement Biomedical Research … of Health (NIH) awards (R21AI171952) and (R01GM140370) all to Y.Y., and by the German Research Foundation …

But scientists have wondered exactly how the microbial community carries out its helpful metabolism: … including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US Department …

… in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data … algorithm — a convolutional neural network, called  ResNet 34   — in order to vectorize protein sequences. Sevim is … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying …

… in soils and water. MGEs like viruses and plasmids drive microbial processes and evolution. This is because MGEs can … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to … of Energy Joint Genome Institute (https://ror.org/04xm1d337), and the National Energy Research Scientific Computing …

Soil Microbiome SFA. She serves as Secretary within the Microbial Ecology Section of the Ecological Society of … and the JGI-EMSL FICUS programs and brings expertise in metagenomics and novel applications for long-read DNA … Greenham stepped down at the end of her term. In late 2023, the JGI launched a solicitation for nominations for three …

… secondary users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of … algorithms to identify billions of protein sequences in metagenomes.  We continue to engage with our user community … outreach activities and hosting visiting scientists at all stages of their careers. Our staff have organized, chaired …