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Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — Summit and … that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running smaller assemblies — …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… are on the order of 100 times the size of what has typically been associated with viruses, while the genomes of … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) uncovered a broad …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… and it feels so rewarding,” Wint said. For Axel Visel, JGI Science Deputy and a co-founder of the internship program, … factors into why fungi have been so evolutionary and ecologically successful,” Wint said. “Fungi play an important role … ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted …
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JGI on the 2020 Highly Cited Researchers List
… in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 researchers working in 21 fields … available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Nikos Kyrpides and  Simon Roux … of fungi, by lifestyles. Additionally, as part of an international consortium, they  conducted a large-scale …
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Rex Malmstrom
…   A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound organelles. Science  376,1453-1458 Nuccio et al 2022 . HT-SIP: a … in the hyphosphere of arbuscular mycorrhizal fungi. Microbiome 199 Needham, D.M. et al. 2019. A distinct lineage …
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A Sorghum Pangenome Opens More Doors to Discovery
… into other crops for biofuels and bioproducts. Historically, work on sorghum has focused on producing high-quality … Shakoor, a research scientist at Donald Danforth Plant Science Center.  This work is the result of an international collaboration, beginning with the work of the late …
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Charting Progress toward Professional Goals
… invaluable scientific and technical experiences.  Genomic data scientist Deanna Beatty sat down with interns hosted at … program at UC Berkeley. Sally Liao came in through the DOE  Science Undergraduate Laboratory Internship program, while … like, the background, like, “what these things are specifically” and “how they relate to other different things” that …
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Meeting Code of Conduct
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JGI@25: The Little Alga That Could
… our collaborations and capabilities to enable great science that will help solve energy and environmental … She and other researchers came together for what was then called a JGI Jamboree, a sort of genomic hackathon to … Program, including work with Olivier Vallon of the French National Centre for Scientific Research on the Chlamy …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… through the initial conversations between Los Alamos National Lab and the Department of Energy (DOE) colleagues. … sectors and it is still seen today as a massive feat in science and collaboration. In closing his presentation, … during his time as program manager, he rarely received calls that were critical of the JGI’s work. Those which he …
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Tracking the Origins of Methane-Producing Microbes
… group. Recently published in the Proceedings of the National Academy of Sciences , researchers at Stanford University, the Chan … “superphylum” where this type of methanogenesis is typically observed, but to the “TACK” superphylum,” said study … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National …
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