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… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … data set will help identify how different elements of the ecosystem interact and respond to changes in the … our understanding of plant-microbe interactions — with potential applications in sustainable forestry and …

… ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … genetic engineering technique CRAGE lands the cover of ACS Synthetic Biology. (Wayne Keefe/Berkeley Lab) … of value to both human and ecosystem health. But bacteria often fail to express their BGC molecules in the lab. By …

Understanding the shared genetic toolkit of ancestral and present-day … to changing environments, scientists have turned their attention to the pangenomes of plants.  Pangenomes encompass a …

… for JGI’s Secondary Metabolites group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene … (1996) … List available on Google Scholar … Education … Publications …

Dr. Cole is interested in studying how plants interact with their … (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List of pubs available on NCBI … Implementation of the Index of Cell Identity as an R package … Education … Selected Publications … Software …

Research in the Analysis R&D group focuses on developing new … and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer … the Wang group has developed customized data analyses and software to enable “grand-scale” scientific projects. These … metagenome binning software … Education … Selected Publications … Software …

… human chromosomes 5, 16, and 19. Following the completion of the human genome project in 2003, he developed … resource for green millet Setaria viridis enables discovery of agronomically valuable loci. Nature Biotechnology … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …

National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at … impact of hydrogen peroxide on protein stress responses and overlap with other stress transcriptomes. The Plant Journal … Award for Research Excellence … Education … Selected Publications … Awards and Honors …

… closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in … Officer provides advice and strategic direction for the overall design and implementation of computational biology … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …