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A telomere-to-telomere genome assembly resource of Bipolaris sorokiniana, the fungal pathogen causing spot blotch and common root rot diseases in barley and wheat
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute … which guide the relationships we nurture in our workplace and seek to establish with our stakeholders. The guiding principles for … users and their science including technical capabilities offered, proposal review procedures and the annual meeting. …
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Science Programs
… The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their … of user projects, develop cutting-edge approaches for and with users, and create computational tools and resources for … Deputy of Science Programs …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields ranging from plant-microbe interactions to functional …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden … Corymbia are more abundant in the drier parts of Australia with lower quality soils and even in the desert areas with … production perspective. By using genomic database alignment tools, researchers searched for TPS genes in C. citriodora . …
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Analyze Data
… data life cycle — from experimental design to reuse. Armed with the high-quality data we generate, tools like artificial intelligence can empower the global research community.   We have two key … The JGI is involved in efforts to integrate data in support of new research questions that span domains. We also work …
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A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β‑Linked GlcNAc Polysaccharides
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    … limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification Sequencing … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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2024 Progress Report
… (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the … for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide … April 2024 — through serving an increased number of users with a record output of products, making data easier to …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … microbial populations in oxygen minimum zones identified SAR11 bacteria as initiators of nitrogen loss in these waters. …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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