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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm … determine if these fungi act as friends or foes. The Impact Microbial communities comprised of fungi and bacteria can …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome … Wales, Cardiff, Genetics Ph.D. – University of Cambridge., Microbial molecular biology Post-doctoral positions  – … Award for Research Excellence … Education … Selected Publications … Awards and Honors …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, …
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How Maize Makes An Antibiotic Cocktail
Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The … corn variety and protect maize by fending off fungal and microbial infections. Scientists had assumed that maize …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and … The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … could help inform efforts at bioengineering symbiotic microbial consortia for bioenergy crops. And because lichens …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research … P. hallii Mutant Library … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Crysten Blaby-Haas
Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials … AT, Blaby-Haas CE. (2024) Machine learning sheds light on microbial dark proteins. Nature Rev Micro 22, 63. Davidi L, … Google Scholar … Education … Awards and Service … Selected Publications …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions … Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell counts or …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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