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JGI Accepts 17 Proposals for Community Science Program
… been approved through the annual Community Science Program (CSP) call of the U.S. Department of Energy (DOE) Joint … evolved from a white paper approved through JGI’s CSP New Investigator call to a full-scale submission. She …
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An Automated Tool for Assessing Virus Data Quality
… that play key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated by viruses in … perform functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps … these sequences may be tainted by the presence of non-viral genes. Up to this point, there has been a lack of fast and …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… loss of cell walls and a complex pattern of evolution for genes related to eating plant compounds in both the oceanic … show the ability to respire with or without oxygen, fix nitrogen, and break down organic and inorganic compounds. …
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A More Intuitive Phytozome Interface
… for over 5 years, provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse … Phytozome v12, and that most bookmarked v12 links (e.g., to gene reports and organism information pages) will be … https://phytozome-next.jgi.doe.gov/info/Ptrichocarpa_v3_0 . Gene pages will also be forwarded (e.g.,  Gene …
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JGI Scientists Pen Genome Watch Articles
… Microbiology column last year — and there’s more to come in 2020. Researchers at the U.S. Department of Energy (DOE) … and metagenome , rather than just by 16S ribosomal RNA gene censuses.  Emiley Eloe-Fadrosh ,  Metagenome Program … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Tanja Woyke Elected to American Academy of Microbiology
… (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for … developing and harnessing single-cell methods to access the genetic material of uncultivated microbes and link their … and leading to the discovery of features such as a new genetic code. More recently reported in Nature , she led a …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… of the groundwater were nearly cleared of contamination. By 2020, the water was at contamination levels that are below … (NCRR) (5P20RR016480-12) and the National Institute of General Medical Sciences (NIGMS) (8 P20 GM103451-12) from …
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Philympics 2021: Prophage Predictions Perplex Programs
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iPHoP: A Matchmaker for Phages and their Hosts
… in all kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding … important environmental processes like  carbon fixation , nitrogen cycling and methane production. Meanwhile, … aimed to streamline a process they often took on: generating virus-host predictions via multiple routes, then …
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Phylometagenomics of cycad coralloid roots reveals shared symbiotic signals.
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Ben Bowen
… datasets with high-performance computing and metabolite atlases. Metabolites, 5(3), 431–442. Yang, J., Rubel, O., … Dealing with the unknown: metabolomics and metabolite atlases. Journal of the American Society for Mass … to HAMLET-induced death; c-Myc and glycolysis. Oncogene, 30(48), 4765–4779. Google Scholar. …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex … to analyze their structure. Scientists found both a gene likely important for sex determination and a shared genetic architecture with Y chromosomes in mammals: a …
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