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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found … called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. The … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to …
Learn more
A User-Centered Approach to Accessing JGI Data
… (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now … users to more easily access public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. … to understanding what these viruses can do. Building on existing virus-host prediction approaches, researchers … of Energy, Office of Science, Biological and Environmental Research, Early Career Research Program awarded …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open access ecological data to better understand … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad Avenue Plume (NRAP) a … The work (proposal:  10.46936/10.25585/60000717 ) conducted by the U.S. Department of Energy Joint Genome …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data … portal Phytozome . Although the Data Portal is currently only accessible via Phytozome, the improvements it … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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JGI at the AGU Fall Meeting
… Meeting, with the theme “Science is Society,” hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges. Maximizing soybean yield is critical to …
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Forming Scientific Connections and Building Community
… and seven graduate students from UC Merced through their long standing internship program. In just two months, the students participated in networking workshops, … integration system for the selection of genes essential for specialized carbon utilization ” Jesica Calderon : “Being a …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… hermaphrodites, expressing both male and female gametes in one individual. But some, including shrub willow  Salix purpurea , employ the evolutionary strategy we are far more familiar with: … plant biologist at West Virginia University (WVU), led the study’s international team, which included scientists from …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in his … slides and anticipating the inevitable questions about the study’s methods and analysis, Lawrence is spending time on …
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