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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became … BA in Biology, Aristotle University of Thessaloniki, Greece …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the Sequencing Technology … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, University of …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … was being waged. In the JGI@25 video below, Susan Lucas, former JGI Production Department Head and current ESnet … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. … Internship Program, first sampled the area in summer 2016.  She described the microbial diversity patterns of …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows … dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using … the discovery of more than 30,000 DGRs in this analysis, a 20-fold increase over what was previously known, throws open …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific … of ways including gathering a more complete view of a population’s genetic makeup and identifying viruses interacting with these populations. Development of this protocol was enabled by the … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting … at the JGI’s history, from its beginnings in the sequencing for the Human Genome Project out to the future of the … with Ari Patrinos. The Genomics Arms Race Ari Patrinos , Former Director of DOE’s Office of Biological and …
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Gotta Catch 'Em Gall
… Kasey Markel and Patrick Shih (UC Berkeley and the Joint BioEnergy Institute) are looking for new ways to engineer plants. So they’ve looked into wasps that program oak trees to raise their young in structures called galls.  In this episode, hear from Kasey …
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What Happens To a Rainforest When You Dial Up Drought?
… Rainforests store a big fraction of all the carbon on Earth, … take a look at what happens to that storage when a rainforest hits a drought. Tag along with their experiments in a fully enclosed, human-made ecosystem: Biosphere 2.      …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On … of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, … on much more maintainable software and hardware infrastructure. Phytozome v13 has been accessible to users since …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for … with the JGI and KBase to tap into their existing infrastructures and technologies, enabling these communities to … National Science Foundation Research Coordination Network for Undergraduate Biology Education (Award # 2418285) and …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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