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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & Education department of … Laboratory (Berkeley Lab) hosted a pitch event promoting fully-supported summer research collaborations through … Systems Biology Knowledgebase (KBase) Ian Blaby for the JGI DNA Synthesis Platform Ben Bowen and Katherine Louie for the …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have … novel technique to access high-quality genomic information using minute quantities of DNA derived from individual environmental cells. The proof …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In … BS in Biochemistry and Biological Chemistry, Nottingham University, UK PhD in Genomics, University of … Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  Ensifer Species during Free-Living …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining … protocol for higher efficiency in Issatchenkia orientalis using electroportation and heat shock methods Asees Kaur … and Identification of Mitochondrial Plasmids from DNA Sequence Moitrish Majumdar Mentors: Bikash Shrestha, …
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex compounds — an energetically … source of antibiotics. Indeed, these anaerobic fungi may be using these compounds for self-defense. But the compounds … was performed under the JGI-EMSL Collaborative Science Initiative and used resources at the DOE Joint Genome …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université … and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem. Microbiome 11, …
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DAP-seq Drives Robust Mapping of Gene Regulation
… view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … complexity of plant genomes. Now, with improvements to DNA Affinity Purification Sequencing (DAP-seq), these … DAP-seq method overcame some of these challenges by using  in vitro -expressed TFs and fragmented genomic DNA, …
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from … single cells and to build sequencing libraries from minimal DNA input without amplification. …
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Natural Prodcast
… Natural Prodcast is a “fireside chat”-style podcast about … species unique and different from one another. They are incredibly important to medicine, the environment, and human health. As the JGI acts on …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … plant and animal genomes can sprawl across billions of DNA base pairs, most fungal genomes contain fewer than 50 …
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